CLSI M100 Ed36 – Antibiotic Zone Diameter & MIC Reference
S = Susceptible
I = Intermediate
R = Resistant
— = No breakpoint
ᵁ = Urine isolates only  |  SDD = Susceptible-Dose Dependent  |  ⚠ = Special warning
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Enterobacterales
E. coli, Klebsiella, Proteus, Enterobacter, Serratia, Citrobacter — Table 2A-1
AntibioticDiskZone Diameter (mm)MIC (µg/mL)Notes
S ≥IR ≤S ≤IR ≥
Ampicillin10 µg1714–161381632Predicts amoxicillin
Amoxicillin-clavulanate20/10 µg1814–17138/416/832/16
Ampicillin-sulbactam10/10 µg1512–14118/416/832/16
Piperacillin-tazobactam100/10 µg25SDD 21–24208/4SDD 16/432/4
Cefazolin (systemic)30 µg2320–2219248
Cefazolin ᵁ30 µg15141632Uncomplicated UTI only
Cefotaxime30 µg2623–2522124
Ceftriaxone30 µg2320–2219124
Cefuroxime (parenteral)30 µg1815–171481632
Cefepime30 µg2519–241824–816SDD: dose-dependent
Ceftazidime30 µg2118–20174816
Ceftazidime-avibactam30/20 µg21208/416/4KPC/OXA-48 producers
Ertapenem10 µg2219–21180.512
Imipenem10 µg2320–2219124
Meropenem10 µg2320–2219124
Gentamicin10 µg1815–1714248
Tobramycin10 µg1713–1612248
Amikacin30 µg2017–19164816
Ciprofloxacin5 µg2622–25210.250.51
Levofloxacin5 µg2117–20160.512
Trimethoprim-sulfamethoxazole1.25/23.75 µg1611–15102/384/76
Tetracycline30 µg1512–14114816
Nitrofurantoin ᵁ300 µg1715–16143264128Urine only
Chloramphenicol30 µg1813–171281632
Salmonella & Shigella spp.
Table 2A-2 — Specific breakpoints differ from other Enterobacterales
AntibioticDiskZone Diameter (mm)MIC (µg/mL)Notes
S ≥IR ≤S ≤IR ≥
Ampicillin10 µg1714–161381632
Cefotaxime30 µg2623–2522124
Ceftriaxone30 µg2320–2219124
Ciprofloxacin (Salmonella)5 µg3121–30200.060.12–0.51⚠ Stricter cutoff than Enterobacterales
Ciprofloxacin (Shigella)5 µg2622–25210.250.51
Levofloxacin (Shigella)5 µg2117–20160.512Shigella only
Azithromycin (S. Typhi)15 µg13121632S. Typhi only
Azithromycin (Shigella)15 µg1611–151081632Shigella only
Trimethoprim-sulfamethoxazole1.25/23.75 µg1611–15102/384/76
Ertapenem10 µg2219–21180.512After resistance to Tier 1
Tetracycline30 µg1512–14114816
Pseudomonas aeruginosa
Table 2B-1
AntibioticDiskZone Diameter (mm)MIC (µg/mL)Notes
S ≥IR ≤S ≤IR ≥
Piperacillin-tazobactam100/10 µg2218–211716/432/464/4
Ceftazidime30 µg1815–171481632
Cefepime30 µg1815–171481632
Ceftazidime-avibactam30/20 µg21208/416/4
Ceftolozane-tazobactam30/10 µg2117–20164/48/416/4
Imipenem-relebactam10/25 µg2320–22192/44/48/4
Aztreonam30 µg2216–211581632
Imipenem10 µg1916–1815248
Meropenem10 µg1916–1815248
Tobramycin10 µg1913–1812124
Amikacin ᵁ30 µg1715–1614163264Urine only
Ciprofloxacin5 µg2519–24180.512
Levofloxacin5 µg2215–2114124
Cefiderocol30 µg1813–17124816Iron-depleted CAMHB required
Colistin / Polymyxin BMIC only24⚠ Disk diffusion unreliable — use MIC only
Staphylococcus spp.
Table 2C — Including MRSA-specific breakpoints
AntibioticDiskZone Diameter (mm)MIC (µg/mL)Notes
S ≥IR ≤S ≤IR ≥
Penicillin10 units29280.120.25Confirm susceptible results
Oxacillin / MRSA screenCefoxitin 30 µg2221≤2≥4Cefoxitin is surrogate; MIC for oxacillin
Ceftaroline (MRSA)30 µg2520–241912–48S. aureus incl. MRSA
Vancomycin (S. aureus)MIC only24–816⚠ Disk diffusion unreliable — use MIC only
DaptomycinMIC only1⚠ Disk diffusion unreliable
Erythromycin15 µg2314–22130.51–48Predicts azithromycin/clarithromycin
Clindamycin2 µg2115–20140.51–24Check D-zone if ery-R, clin-S
Tetracycline30 µg1915–18144816
Doxycycline30 µg1613–15124816
Ciprofloxacin5 µg2116–2015124
Levofloxacin5 µg1916–1815124
Trimethoprim-sulfamethoxazole1.25/23.75 µg1611–15102/384/76
Linezolid30 µg2623–252248Any growth = resistant
Rifampin5 µg2017–1916124Never use alone
Gentamicin10 µg1513–14124816Use only in combination
Chloramphenicol30 µg1813–171281632
Enterococcus spp.
Table 2D — E. faecalis, E. faecium
AntibioticDiskZone Diameter (mm)MIC (µg/mL)Notes
S ≥IR ≤S ≤IR ≥
Ampicillin10 µg178No resistant breakpoint
Penicillin10 units158No resistant breakpoint
Vancomycin30 µg1715–161448–1632VRE screening critical
Linezolid30 µg2321–2220248
Daptomycin (E. faecalis)MIC only4MIC only
Tetracycline30 µg1915–18144816
Erythromycin15 µg2314–22130.51–48Predictive value limited
Rifampin5 µg2017–1916124Combination therapy only
Haemophilus influenzae
Table 2E — Tested on Haemophilus Test Medium (HTM)
AntibioticDiskZone Diameter (mm)MIC (µg/mL)Notes
S ≥IR ≤S ≤IR ≥
Ampicillin10 µg2219–2118124β-lactamase testing recommended
Amoxicillin-clavulanate20/10 µg2017–19164/28/416/8
Ceftriaxone30 µg262No resistant breakpoint
Azithromycin15 µg124No resistant breakpoint
Ciprofloxacin5 µg211No resistant breakpoint
Levofloxacin5 µg172
Trimethoprim-sulfamethoxazole1.25/23.75 µg1611–15100.5/9.51/19–2/384/76
Tetracycline30 µg2926–2825248
Chloramphenicol30 µg2926–2825248CSF isolates: always report
Rifampin5 µg2017–1916124Prophylaxis contacts only
Streptococcus pneumoniae
Table 2G — Tested on MHA + 5% defibrinated sheep blood
AntibioticDiskZone Diameter (mm)MIC (µg/mL)Notes
S ≥IR ≤S ≤IR ≥
Penicillin (non-meningitis)Oxacillin screen≥200.060.12–12⚠ If oxacillin ≤19mm, perform MIC
Penicillin (meningitis/CSF)MIC only0.060.12Meningitis breakpoints only
Erythromycin15 µg2116–20150.250.51Predicts azithromycin/clarithromycin
Clindamycin2 µg1916–18150.250.51ICR test if Ery-R
Levofloxacin5 µg1714–1613248S predicts moxifloxacin
Vancomycin30 µg171No resistant breakpoint
Trimethoprim-sulfamethoxazole1.25/23.75 µg1916–18150.5/9.51/19–2/384/76
Doxycycline30 µg2825–27240.250.51
Chloramphenicol30 µg2119–20184816
Linezolid30 µg212No resistant breakpoint
Streptococcus spp. — β-Hemolytic Groups
Table 2H-1 — Group A, B, C, G — Tested on MHA + 5% sheep blood
AntibioticDiskZone Diameter (mm)MIC (µg/mL)Notes
S ≥IR ≤S ≤IR ≥
Penicillin or Ampicillin0.12/0.25⚠ Resistance extremely rare; never report R without confirmation
Erythromycin15 µg2116–20150.250.51Predicts azithromycin/clarithromycin
Clindamycin2 µg1916–18150.250.51D-zone test required if Ery-R
Vancomycin30 µg171No resistant breakpoint
Levofloxacin5 µg1714–1613248
Tetracycline30 µg2319–2218248
Linezolid30 µg212No resistant breakpoint
Chloramphenicol30 µg2119–20184816
🛡️ Resistance Reference Lists
Intrinsic & Acquired Resistance — CLSI M100 Ed36 Table 1A
Intrinsic Resistance = natural/inherent resistance present in all strains of that species — encoded in the organism's chromosome; not transferable. Do not test or report as susceptible.
Acquired/Common Resistance = resistance patterns frequently encountered clinically; warrant selective testing or confirmatory methods. Source: CLSI M100 Ed36 Table 1A & genus-specific notes.
Enterobacterales (E. coli, Klebsiella, Proteus, Enterobacter, Serratia, Citrobacter)
Family Enterobacteriaceae — includes many clinically significant nosocomial pathogens
Intrinsic Resistance
  • Vancomycin (all Enterobacterales — Gram-negative outer membrane barrier)
  • Linezolid (Enterobacterales intrinsically resistant)
  • Daptomycin (requires Ca²⁺-binding; Gram-negative outer membrane prevents access)
  • Fusidic acid (outer membrane impermeability)
  • Glycopeptides (vancomycin, teicoplanin) — all Gram-negatives
  • Klebsiella spp. — intrinsically resistant to Ampicillin (chromosomal SHV β-lactamase)
  • Enterobacter, Serratia, Citrobacter — AmpC β-lactamase (inducible); may appear susceptible but can de-repress on treatment
  • Proteus mirabilis — intrinsically resistant to Nitrofurantoin, Polymyxins (colistin), Tetracycline
  • Proteus vulgaris — resistant to Ampicillin, Cephalothin
  • Morganella morganii — resistant to Ampicillin, Amoxicillin-clavulanate, Cephalothin, Colistin, Nitrofurantoin
  • Providencia spp. — resistant to Colistin, Nitrofurantoin, Tetracycline
⚠ Gram-negative organisms are intrinsically resistant to glycopeptides (vancomycin, teicoplanin) due to the outer membrane lipopolysaccharide barrier preventing drug access to cell wall target.
Frequently Acquired Resistance
  • ESBL (Extended-Spectrum β-Lactamases) — CTX-M, SHV, TEM variants; resistance to all penicillins, cephalosporins, aztreonam
  • Carbapenem resistance via KPC, NDM, OXA-48, VIM, IMP carbapenemases (CRE)
  • Plasmid-mediated AmpC (CMY-2) — cephalosporin resistance
  • Fluoroquinolone resistance (PMQR, gyrA/parC mutations)
  • Aminoglycoside resistance (AMEs — AAC, ANT, APH enzymes)
  • Colistin resistance (mcr-1 plasmid; LPS modification)
  • Trimethoprim-sulfamethoxazole resistance (dhfr, sul genes)
ESBL-producing strains: treat cephalosporins, penicillins, aztreonam as resistant regardless of in-vitro results. Confirm with double-disk synergy test or automated ID system.
Pseudomonas aeruginosa
Non-fermenting Gram-negative rod — significant nosocomial pathogen with multiple resistance mechanisms
Intrinsic Resistance
  • Vancomycin (Gram-negative outer membrane)
  • Ampicillin, Amoxicillin, Amoxicillin-clavulanate (chromosomal AmpC + low outer membrane permeability)
  • 1st and 2nd generation cephalosporins (e.g., cefazolin, cefuroxime)
  • Trimethoprim (intrinsic insensitivity)
  • Ertapenem (intrinsic resistance; OprD efflux)
  • Linezolid, Daptomycin, Glycopeptides
  • Chloramphenicol (MexAB-OprM efflux pump)
  • Tetracyclines (MexAB-OprM efflux; reduced porin uptake)
  • Nitrofurantoin
Frequently Acquired Resistance
  • Carbapenem resistance: OprD porin loss, overexpression of MexAB-OprM, VIM/IMP/NDM/SPM metallo-β-lactamases
  • ESBL / overexpressed AmpC (cephalosporin resistance)
  • Fluoroquinolone resistance (GyrA/ParC mutations + efflux upregulation)
  • Aminoglycoside resistance (AMEs, 16S rRNA methylases, efflux)
  • Colistin resistance (LPS modification, PmrAB/PhoPQ mutations)
  • Multi-drug resistant (MDR) / Extensively drug resistant (XDR) strains — common in ICU patients, CF lung
MDR P. aeruginosa: consider newer agents — ceftolozane-tazobactam, ceftazidime-avibactam, imipenem-relebactam, cefiderocol.
Staphylococcus spp. (S. aureus, CoNS)
Gram-positive cocci; MRSA and VRSA are critical resistance phenotypes
Intrinsic Resistance
  • Aztreonam (Gram-positive outer wall; target absent)
  • Nalidixic acid (intrinsically resistant)
  • Polymyxins / Colistin (Gram-positive cell wall; no LPS target)
  • Trimethoprim — S. aureus has low intrinsic susceptibility; always use TMP-SMX combination
  • S. saprophyticus: intrinsically resistant to Novobiocin (disc test used for species ID)
Frequently Acquired Resistance
  • MRSA (methicillin-resistant): mecA or mecC gene (PBP2a) — resistant to ALL β-lactams except ceftaroline, ceftobiprole
  • VRSA/VISA (vancomycin intermediate/resistant): vanA gene acquisition or cell wall thickening
  • Penicillinase (β-lactamase TEM/SHV): penicillin resistance in >90% isolates
  • Macrolide resistance: erm genes (erythromycin-clindamycin cross-resistance); efflux (mefA)
  • Inducible clindamycin resistance (iMLSB): screen with D-zone test (erythromycin + clindamycin disks)
  • Fluoroquinolone resistance (GyrA/GrlA mutations)
  • Tetracycline/doxycycline resistance (tetK, tetM genes)
  • Linezolid resistance (cfr gene, 23S rRNA mutations) — rare
  • Fusidic acid resistance (fusA mutations)
  • Mupirocin resistance: high-level (ileS2 gene, MIC >512 µg/mL) — MRSA decolonization concern
MRSA detection: Cefoxitin disk (30 µg) is the CLSI-preferred surrogate marker. Zone ≥22 mm = oxacillin-susceptible (MSSA); ≤21 mm = MRSA. mecA PCR is gold standard.
Enterococcus spp. (E. faecalis, E. faecium)
Gram-positive cocci; VRE is a major infection control concern
Intrinsic Resistance
  • Cephalosporins — all generations (low PBP affinity)
  • Clindamycin (efflux pump, reduced target affinity)
  • Aminoglycosides at low levels (cell wall/membrane barrier reduces uptake); high-level synergy testing required
  • Trimethoprim (some folate scavenging; clinical outcomes poor)
  • Aztreonam and monobactams
  • Polymyxins / Colistin
  • Nafcillin, Oxacillin (low PBP2 affinity)
  • E. faecium: intrinsically resistant to Ampicillin at higher MICs than E. faecalis
Frequently Acquired Resistance
  • VRE — Vancomycin-resistant Enterococci: vanA (high-level resistance, ≥64 µg/mL), vanB (variable), vanC (E. gallinarum, E. casseliflavus — intrinsic low-level)
  • High-level aminoglycoside resistance (HLAR): gentamicin MIC ≥500; synergy lost — bifurcated treatment needed
  • Ampicillin resistance (E. faecium): PBP5 alteration; common in nosocomial E. faecium
  • Linezolid resistance: cfr, optrA, poxtA genes; 23S rRNA mutations
  • Daptomycin resistance: LiaFSR pathway mutations; cell membrane remodeling
  • Fluoroquinolone resistance (GyrA/ParC mutations)
VRE screening: Use vancomycin disk (30 µg). Zone ≤14 mm requires MIC confirmation. VanA/vanB gene detection by PCR is definitive. Isolate VRE patients for infection control.
Haemophilus influenzae & H. parainfluenzae
Fastidious Gram-negative coccobacillus — requires HTM for testing
Intrinsic Resistance
  • Vancomycin (Gram-negative outer membrane)
  • Clindamycin (outer membrane impermeability)
  • Daptomycin, Linezolid (not clinically active)
  • Oxacillin (not tested/reported for Haemophilus)
  • Cefazolin (poor activity against Haemophilus spp.)
Frequently Acquired Resistance
  • β-lactamase-positive strains: ampicillin/amoxicillin resistance (TEM-1 β-lactamase) — ~30–40% of isolates
  • BLNAR (β-lactamase-negative, ampicillin-resistant): ftsI (PBP3) mutations — low penicillin-binding affinity
  • BLPACR (β-lactamase-positive, amoxicillin-clavulanate-resistant)
  • Trimethoprim-sulfamethoxazole resistance (dhfr, sul genes)
  • Tetracycline resistance (tetB gene)
  • Chloramphenicol resistance (CAT enzyme) — less common
β-lactamase detection is mandatory for all significant H. influenzae isolates. Use nitrocefin disk or chromogenic test. BLNAR strains require MIC testing — disk diffusion may overestimate susceptibility.
Streptococcus pneumoniae
Gram-positive diplococci; α-hemolytic; site-specific breakpoints (meningitis vs. non-meningitis)
Intrinsic Resistance
  • Aztreonam (no β-lactamase; no target for monobactams)
  • Aminoglycosides (intrinsically low susceptibility; not clinically used alone)
  • Trimethoprim alone (low intrinsic activity)
  • Colistin / Polymyxins (Gram-positive cell wall structure)
  • Metronidazole (obligate anaerobe target; not applicable)
Frequently Acquired Resistance
  • Penicillin resistance: PBP2b/2x/1a mutations — PSSP (sensitive), PISP (intermediate), PRSP (resistant)
  • Macrolide resistance: erm(B) gene (methylase — cross-resistance with clindamycin) or mefA (efflux)
  • Fluoroquinolone resistance: ParC/GyrA mutations (levofloxacin-resistant strains emerging)
  • Tetracycline resistance: tetM (ribosomal protection)
  • TMP-SMX resistance: dhfr, sul mutations (high resistance rates in many regions)
  • Multidrug-resistant S. pneumoniae (MDRSP): resistant to ≥3 drug classes
Penicillin susceptibility: Use 1 µg oxacillin disk screen. Zone ≥20 mm = likely susceptible (MIC ≤0.06 µg/mL). Zone ≤19 mm: perform MIC by broth microdilution with site-specific (meningitis vs. non-meningitis) breakpoints.
Streptococcus spp. — β-Hemolytic Groups (A, B, C, G)
Group A = S. pyogenes; Group B = S. agalactiae; Groups C, G = S. dysgalactiae
Intrinsic Resistance
  • Aminoglycosides (intrinsic low-level; use synergy testing for serious infections)
  • Nalidixic acid (no target activity in Gram-positive)
  • Aztreonam
  • Colistin / Polymyxins
  • Metronidazole (obligate aerobe; not applicable)
Frequently Acquired Resistance
  • Macrolide resistance: erm(B)/erm(TR) — constitutive or inducible MLSB; mefA efflux
  • Inducible clindamycin resistance (iMLSB): D-zone test mandatory when ery-R, clin-S
  • Tetracycline resistance (tetM, tetO)
  • Fluoroquinolone resistance: less common, but increasing in GAS
  • TMP-SMX — not clinically reliable for streptococcal infections
  • Penicillin resistance in GAS (S. pyogenes) — never reported in >80 years; always report as susceptible without testing
Group A Streptococcus (GAS): Penicillin/ampicillin resistance has NEVER been documented. Never report GAS as penicillin-resistant. D-zone test is mandatory for iMLSB detection before reporting clindamycin as susceptible.
Acinetobacter baumannii complex (CRAB)
Non-fermenting Gram-negative coccobacillus — critical WHO priority pathogen
Intrinsic Resistance
  • Vancomycin (Gram-negative outer membrane)
  • Linezolid, Daptomycin
  • Ertapenem (chromosomal PBP + intrinsic OXA-51-like carbapenemase)
  • Penicillin (low affinity + intrinsic β-lactamase)
  • Fusidic acid
  • Trimethoprim alone
Frequently Acquired Resistance
  • Carbapenem resistance: OXA-23, OXA-24/40, OXA-58 (acquired OXA carbapenemases); NDM metallo-β-lactamase
  • Pandrug resistance (PDR) — resistant to ALL available antibiotics in some strains
  • Aminoglycoside resistance (AMEs + 16S rRNA methylases)
  • Fluoroquinolone resistance (GyrA/ParC mutations + AdeABC efflux)
  • Tigecycline resistance (AdeABC/AdeIJK efflux pump overexpression)
  • Colistin resistance (LPS modification: lpxA/C/D mutations, mcr genes)
CRAB (Carbapenem-Resistant Acinetobacter baumannii): WHO Critical Priority. Active agents — sulbactam-durlobactam, cefiderocol. Colistin + carbapenems (PD dosing) for limited options. Always request MIC testing.
Select the organism, then enter the measured zone diameter (in mm) for each antibiotic tested. The tool will automatically interpret results as Susceptible (S), Intermediate (I), or Resistant (R) based on CLSI M100 Ed36 breakpoints, and generate a printable summary report.
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